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Genetic mapping Genetic mapping can be used to detect regions associated with traits in crops with existing references, or as a basis for creating new pseudomolecules. Genetic maps can be constructed using inbred populations such as F1, F2, Recombinant Inbred Line (RIL), Double Haploid (DH), etc., which are commonly used in breeding studies. SNPs are obtained using population resequencing data or GBS data, and linkage map construction is performed by statistical analysis of recombination frequency with… Read more

QTL analysis Qualitative traits, such as weight or height, are caused by a combination of genes rather than a single gene, and the regions of these genes are called Quantitative Trait Loci (QTLs). QTL analysis allows you to explore regions within your genome that are responsible for a particular trait. SNPs are obtained using resequencing or GBS data from the population to be analyzed, and SNP markers selected through a filtering process above a certain threshold are used to create a genetic… Read more

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Population genomics